Kristina15
Putative synapse locations were obtained by Anish Simhal.
Around each synapse across each channel the sum of pixel intensities within an 11x11x11 cube are calculated to produce a feature vector. These feature vectors are combined into a data matrix.
The data matrix is then z-scored before running it through meda.
We did this for samples of size 1,000 and 10,000.
The locations used were from the top half of the entire dataset as the rest of the locations were still being downloaded.
Sample size 1,000 (Left) and 10,000 (Right)
Outliers as given by randomForest
Cumulative Variance with Elbows
Hierarchical GMM Classifications
Hierarchical GMM Dendrogram
Stacked Cluster Means plot
Cluster Means