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Associate Research Professor (as of 09/01/2008)
and Member Other Affiliations Telephone Fax Office Location |
Department of Applied Mathematics and Statistics at The Johns Hopkins University
Center for Imaging Science Laboratoire de Math�matiques Paul Painlev� and Institut Universitaire de Technologie , Universit� des Sciences et Technologies de Lille [email protected] +1-410-516-7341 +1-410-516-7459 Whitehead 208B 3400 North Charles Street Baltimore, MD 21218-2686, U.S.A. |
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| Biosketch |
I received my doctorate in Applied Mathematics and Statistics from
the Universit� Paris
Sud (Orsay, France) in January 1995. My dissertation was
performed at
INRIA (Rocquencourt, France).
I spent a year as
post-doc in the
department of Statistics at the University of Chicago
(IL, U.S.A.).
I was then appointed professor at the Universit� des Sciences et
Technologies de Lille (Lille, France).
I am currently a faculty member of
the Department of Applied
Mathematics and Statistics at The Johns Hopkins University .
I am member of the Center for
Imaging Science and faculty member of the Laboratoire Paul Painleve |
| Past and future activities: | Research Statement (September 2014) Teaching Statement (September 2014) Resum� |
| Research fields: | Statistical modeling in computer vision, medical image processing, natural language processing, bioinformatics, computational neuroscience, computational neurology. |
| Selected Publications : |
B. Jedynak "Le jeu des 20 questions et autre contributions en statistique mathematique et computationnelle".
Memoire presente en vue de l'habilitation a diriger des recherches. . Jongho Kim, Andrew G. Horti, William B. Mathews, Vladimir Pogorelov, Heather Valentine, James R. Brasic, Daniel P. Holt, Hayden T. Ravert, Robert F. Dannals, Luwei Zhou, Bruno M. Jedynak, Atsushi Kamiya, Mikhail V. Pletnikov, Dean F. Wong, ``Quantitative multimodal brain autoradiography of glutamatergic, dopaminergic, cannabinoid, and nicotinic receptors in mutant Disrupted-In-Schizophrenia-1 (DISC1) mice", Molecular Imaging & Biology, in press. Allison M. Murawski, Saumya Gurbani, Mariah Klunk, Laurent Younes, Sanjay K. Jain, and Bruno M. Jedynak, ``Imaging the Evolution of Reactivation Pulmonary Tuberculosis in Mice Using 18F-2-Fluoro-Deoxy-D-Glucose Positron Emission Tomography", Journal of Nuclear Medicine, In Press. M. Bilgel, Y. An, A. Lang, J. Prince, L. Ferrucci, B. Jedynak, S. M. Resnick, ``Trajectories of Alzheimer disease-related cognitive measures in a longitudinal sample", Alzheimer's & Dementia, In press. Alexander Crits-Christoph, Courtney K Robinson, Tyler Barnum, W Florian Fricke, Alfonso F Davila, Bruno Jedynak, Christopher P McKay and Jocelyne DiRuggiero, ``Colonization patterns of soil microbial communities in the Atacama Desert", Microbiome 1:28, 2013. Sznitman, A. Lucchi, P. I. Frazier, B. Jedynak and P. Fua "An Optimal Policy for Target Localization with Application to Electron Microscopy", International conference on Machine Learning, 2013. Sznitman, Raphael; Richa, Rogerio; Taylor, Russell; jedynak, bruno; Hager, Gregory D. "Unified detection and tracking of instruments during retinal microsurgery", IEEE PAMI, 2012 Oct 1. John A. bogovic, Bruno Jedynak, Rachel Rigg, Annie Du, Bennett A Landman, Jerry L Prince, Sarah H Ying,"Approaching Expert Results Using a Hierarchical Cerebellum Parcellation Protocol For Multiple Inexpert Human Raters", NeuroImage, 2013 Jan 1;64:616-29. Bruno Jedynak, Andrew Lang, Bo Liu, Elyse Katz, Yanwei Zhang, Bradley T. Wyman, David Raunig, Pierre C. Jedynak, Brian Caffo and Jerry Prince for the Alzheimer's Disease Neuroimaging Initiative, "A Computational Neurodegenerative Disease Progression Score: Method and Results with the Alzheimer's Disease Neuroimaging Initiative Cohort", NeuroImage 2012 Nov 15;63(3):1478-86. Peter Frazier, Bruno M. Jedynak and Li Chen, "Sequential Screening: A Bayesian Dynamic Programming Analysis Of Optimal Group-Splitting", proceedings of the Winter Simulation Conference 2012. Bruno Jedynak, Bo Liu, Andrew Lang, Yulia Gel and Jerry Prince, A Time-Change Method for Computing an Alzheimer's Disease Progression Score, proceedings of NIBAD'2012 (workshop associated with MICCAI 2012). Mrudula Pullambhatla, Jean Tessier, Graham Beck, Bruno Jedynak, Jens U Wurthner, Martin G Pomper: [125I]FIAU imaging in a preclinical model of lung infection: quantification of bacterial load. Am J Nucl Med Mol Imaging 2012;2(3):260-270. Bruno Jedynak, Peter L. Frazier and Raphael Sznitman, "Twenty Questions with Noise: Bayes Optimal Policies for Entropy Loss" , Journal of Applied Probability, 49(1), March 2012. R. Sznitman, A. Basu, R Richa, James Handa, P. Gehlbach, B. Jedynak, R. H. Taylor, G. D. Hager, "Unified Detection and Tracking in Retinal Microsurgery", proceedings of MICCAI 2011. Camille Vidal, Dale Beggs, Laurent Younes, Sanjay K. Jain and Bruno Jedynak, "Incorporating User Input in Template-Based Segmentation" , proceedings of ISBI 2011 Raphael Sznitman and Bruno Jedynak, "Active Testing for Face Detection and Localization" , IEEE Trans. on PAMI, 32(10), 2010. Stephanie L. Davis, Eric L. Nuermberger, Peter Um, Camille Vidal, Bruno Jedynak, Martin G. Pomper, William R. Bishail, and Sanjay K. Jain. "Non-invasive pulmonary [18F]-2-fluoro-deoxy-D-glucose positron emission tomography correlates with bactericidal activity of tuberculosis drug treatment", Antimicrobial Agents and Chemotherapy. In press, 2009. . C. Vidal, J. Hewitt, S.Davis, L. Younes, S. Jain and Bruno Jedynak, "Template Registration with Missing Parts: Application to the Segmentation of Tuberculosis Infected Lungs", Proceedings of the International Symposium on Biomedical Images, SPIE'09, April 13-17 2009. Penumetcha N, Kabadi S, Jedynak B, Walcutt C, Gado MH, Wang L, Ratnanather JT, "Geomeric-intensity based semi-automated delineation of the tentorium cerebelli from MRI scans'. Journal of Neuroimaging. In press. 2009. Camille Vidal, Bruno Jedynak, "Learning to Match: Deriving optimal template-Matching algorithms from Probabilist Image Models", International Journal of Computer Vision. In press. 2009. Joshua Vogelstein, Brendon Watson, Adam Packer, Bruno Jedynak, Rafael Yuste, and Liam Paninski, "Spike inference from calcium imaging using sequential Monte Carlo methods", Biophysical journal. In press. 2009 C. Izard, B. Jedynak "Statistical Deformable Model Applied to Anatomical Landmark Detection", Proceedings of the International Symposium on Biomedical Images, SPIE 2008 . Cho H, J�nsson H, Campbell K, Melke P., Williams JW, Melke P., Jedynak B., Stevens A.M., Groisman A. and Levchenko A. "Self-Organization in High-Density Bacterial Colonies: Efficient Crowd Control". PLoS Biol} 5(11): e302 doi:10.1371/journal.pbio.0050302 . N. Penumetcha, B. Jedynak, M. Hosakere, E. Ceyhan, K.N. Botteron, J.T. Ratnanather, "Segmentation of arteries in MPRAGE images of the ventral medial prefrontal cortex", Comput Med Imaging Graph. 2008 Jan;32(1):36-43. Epub 2007 Oct 26. H. Huang, B. Jedynak and J. Bader, ``Where have all the interactions gone ? Estimating the coverage of two-hybrid protein interaction maps'', PLoS Computational Biology, Vol. preprint, No. 2007. (1 September 2007), e214.eor. B. Jedynak, d. Karakos Finding a Needle in a Haystack: Conditions for Reliable Detection in the Presence of Clutter, Probability and Statistic Letters 78 (5), 2007. B. Jedynak and D. Karakos, "Unigram Language Models using Diffusion Smoothing over Graphs", in Proceedings of the 2007 Workshop on Graph-based Methods for Natural Language Processing (TextGraphs-2), Rochester, NY, April 26, 2007.. C. Izard, B. Jedynak, C. Stark Spline-Based Probabilistic Model for Anatomical Landmark Detection , Medical Imaging Computing and Computer Assisted Intervention, MICCAI'06, October 2006, Copenhagen. C. Izard, B. Jedynak, Bayesian Registration for anatomical Landmark Registration , IEEE International Symposium on Biomedical Imaging, ISBI'06, April 2006, Arlington VA B. Jedynak, S. Khudanpur and A. Yazgan, Estimating Probabilities from Small Samples , 2005 Proceedings of the American Statistical Association, Statistical computing section [CD-ROM], Alexandria, VA : American Statistical Association. C. Izard, B. Jedynak, and C. Stark, Automatic Landmarking of Magnetic Resonance brain Images , SPIE International Symposium on Medical Imaging, 12-17 February 2005, San Diego, California, USA. H. Zheng, M. Daoudi and B. Jedynak, From Maximum Entropy to Belief Propagation: An application to Skin Detection , Proceedings of the British Machine Vision Conference (BMVC'04), September 7-9, 2004 B. Jedynak, H. Zheng and M. Daoudi, Skin Detection Using Pairwise Models , Image and Vision Computing, September 2005. H. Zheng, M. Daoudi and B. Jedynak, Blocking Adult Images Based on Statistical Skin Detection , Electronic Letters on Computer Vision and Image Analysis, Volume 4, Number 2, pages 1-14, 2004. B. Jedynak, S. Khudanpur, Maximum Likelihood Set for Estimating a Point Mass Function, Neural Computation, 17,7, July 2005, pp 1508-1530. A preliminary draft is available here B. Jedynak, H. Zheng and M. Daoudi, Statistical Models for Skin Detection , IEEE Workshop on Statistical Analysis in Computer Vision, June 22 2003. B. Jedynak, H. Zheng and M. Daoudi, Maximum Entropy Models for Skin Detection , Third Indian Conference On Computer Vision, Graphics and Image Processing, ICVGIP 2002, pp. 276-281, Ahmedabad, India, December 16-18 2002. B. Jedynak, Chercher une aiguille dans une botte de foin , Publication IRMA, 56-XII, December 2001. M. Obeid, B. Jedynak and M. Daoudi, Image Indexing and Retrieval Using Intermediate Features , Proc. of the ninth ACM (Association for Computing Machinery) International Conference on Multimedia 2001}, pp. 531--533, Ottawa, Canada, Sept. 30 - Oct. 5 2001. D. Geman and B. Jedynak, Model-based classification trees, IEEE Trans. Info. Theory, 47, 1075-1082, 2001. B. Jedynak, Strat�gies visuelles et jeu des 20 questions , (Alice's choice) Shape Recognition and Visual Strategy , CNRS-INFO, July 2000. Y. Amit, D. Geman and B. Jedynak,, " Efficient focusing and face detection," Face Recognition: From Theory to Applications, eds. H. Wechsler et al, NATO ASI Series F, Springer-Verlag, Berlin, 157-173,1998. F. Jung, B. Jedynak and D. Geman, "Recognizing buildings in aerial images," Automatic Extraction of Man-Made Objects from Aerial and Space Images, II, Birkhauseer (Basel), Ascona, 173-182, May, 1997. D. Geman and B. Jedynak, "An active testing model for tracking roads from satellite images," IEEE Trans. Pattern Anal. Mach. Intell, 18,1, 1-14, 1996. B. Jedynak and F. Fleuret, Reconnaissance d'objets 3D � l'aide d'arbres de classification , Proceedings of the french conference on Image and communication (IMAGECOM 1996) |
| Collaborators: |
Donald
Geman
Mohamed Daoudi Yali Amit Fran�ois Fleuret Sanjeev Khudanpur Peter Frazier Jerry Prince |
| Phd Students |
Huicheng Zheng
Camille Izard Raphael Sznitman Ehsan Variani Purnima Rajan Murat Bilgel |
| Slides of presentations |
Alzheimer's disease progression
20 Questions Landmarking Brain MRI Language Models Diffusion Kernels on Graphs and Applications to Unigram Models |